This is a two-part workshop. Part1, the morning session (10 am - 12 pm) provides a brief introduction to techniques, platforms, and methods used in chromatin profiling experiments, including Transcription Factor / Histone ChIP-Seq and ATAC-Seq. The afternoon session (1 pm - 3 pm) focuses on hands-on data analysis practice using HSLS-licensed CLC Genomics Workbench and TRANSFAC/Match software.
Participants will learn how to
Experimental biologists seeking to analyze ChIP-Seq data generated through experiments or retrieved from a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command line interface is required.
PartekFlow: provides software analysis solution for next-generation sequencing data applications.
Please include the following statement in the acknowledgments section for all publications, posters, and presentations:
[Software name] licensed through the Molecular Biology Information Service of the Health Sciences Library System, University of Pittsburgh (RRID:SCR_011975) was used for data analysis.
If you used the Pitt-CRC server for CLC Genomics Workbench, then please also include the following text in the acknowledgments section for all publications, posters, and presentations:
This research was supported in part by the University of Pittsburgh Center for Research Computing through the resources provided.