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HSLS MolBio Available Software

Bioinformatics software available to Pitt researchers.

Resources A - Z

CLC Genomics Workbench (QIAGEN)
CLC Main Workbench (QIAGEN)
Correlation Engine (aka NextBio) (BaseSpace)
Human Genome Mutation Database (HGMD) (QIAGEN)
Ingenuity Pathway Analysis (IPA) (QIAGEN)
Lasergene (DNASTAR)
Partek Flow (Partek)
Sequencher (Gene Codes)
SnapGene (GSL Biotech)
TRANSFAC/Match (geneXplain GmbH)

Which Tool Should I Use To...

...align multiple sequences?
...design primers?
- CLC Main Workbench
...discover mechanisms of drug and disease?
- Correlation Engine
...discover potential biomarkers?
- Correlation Engine
- Ingenuity Pathway Analysis
...find information on transcription factors?
- TRANSFAC/Match
...identify disease-causing mutations?
- HGMD

...identify biological pathways?
- Ingenuity Pathway Analysis
...visualize & analyze DNA, RNA, & protein sequence data?
...visualize & analyze microarray data?
- Partek Genomics Suite
...visualize & analyze next generation sequencing data?
- CLC Genomics Workbench
- Partek Genomics Suite
...visualize & analyze qPCR data?
- Partek Genomics Suite