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HSLS MolBio Available Software

Bioinformatics software available to Pitt researchers.

About Partek Genomics Suite

Partek Genomics Suite software offers an intuitive user interface and built-in workflows for a variety of genomic applications that guide researchers though every step of the analysis process.


  • Gene expression
  • miRNA expression
  • Exon expression
  • Copy number
  • Allele specific copy number
  • Loss of Heterozygosity (LOH)
  • Association
  • Trio
  • ChIP-chip

Next Generation Sequencing

  • RNA-Seq
  • miRNA-Seq
  • ChIP-Seq
  • DNA-Seq
  • Methylation

Partek Genomics Suite software is built on a superior foundation of statistics, which are used to power information rich, and interactive visualizations, allowing researchers to easily interpret the biological meaning of their genomic data.

  • Three-dimensional PCA plots to visualize data distribution and outliers
  • Hierarchical clustering to classify vast numbers of genes into revealing patterns
  • Profile trellis to identify groups of differentially expressed genes
  • Venn diagrams to identify common and unique sample characteristics
  • Motif discovery to determine binding-site motifs of sequences
  • Gene Ontology Enrichment to determine gene grouping based on their molecular functions
  • Chromosome viewer to visualize how samples map to the reference genome with customizable tracks for SNP detection, differential expression, peak detection, gene annotation, and methylation regions, all integrated into a single study

Registration & Access Info

Register here

  • Must have Pitt email address
  • Limited to on-campus computers
  • Runs on PC & Mac & Linux

Software support