This workshop will introduce Microbial analysis techniques, workflows, followed by software demonstration using HSLS-Licensed CLC Genomics workbench.
Upon completion, you will be able to:
Experimental biologists seeking to analyze Microbial Genomics data generated through experiments or retrieved from a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command line interface is required.
CRC-CLCBio Genomics server account setup - Instructions to connect to the CLCBio Genomics Server hosted at the Center for Research Computing (CRC)
- NIH Human Microbiome Project
- MGnify - A database for Microbiome by EBI
- ENA (Europian Nucleotide Archive)
- Microbiome DB
- FASTQC - a quality control tool for high throughput sequence data
- Venn Diagram Creator
- BioRender - Scientific illustrations creating tool
Please include the following statement in the acknowledgments section for all publications, posters, and presentations:
CLC Genomics Workbench software licensed through the Molecular Biology Information Service of the Health Sciences Library System, University of Pittsburgh (RRID:SCR_011975) was used for data analysis.
If you used the Pitt-CRC server for CLC Genomics Workbench, then please also include the following text in the acknowledgments section for all publications, posters, and presentations:
This research was supported in part by the University of Pittsburgh Center for Research Computing through the resources provided.