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HSLS MolBio Workshops

Information & resources for hands-on bioinformatics classes.

Objective

Gene expression Visualization: Licensed Tools

This 2-hr long workshop focuses on the visualization of gene expression data using HSLS-licensed Partek Flow software.

Participants will learn : 

  • Overview of Partek flow
  • import RNA-Seq count matrix data into Partek Flow and identify differentially expressed genes
  • generate publication-quality graphics such as PCA, volcano plots, heat maps, and Venn diagrams

Target Audience

Experimental biologists seeking to learn how to visualize the data generated through experiments or retrieved from a publication or a repository such as GEO. The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither computer programming experience nor familiarity with command line interface is required.

Workshop Materials

Powerpoints

Data Download

Software Registration

Tutorials

Selected Tutorials

Databases and Tools

References

Feedback

  • Class Evaluation

Attribution

Partek Flow

Partek Flow software licensed through the Molecular Biology Information Service of the Health Sciences Library System, University of Pittsburgh was used for data analysis.